species:   Clros
pid:       PID2224
parent:    cro-mir-18
paralog:   
locus:     CADEHS020000003.2:1621040-1621076
matures:   ['UCUUCCGUAGUAUAGUG', 'CUCUUGCUGGGUUAGGAA']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000003.2:1621040-1621076

13944 out of bounds
1100 alignments
1100 proper strand
1090 stranded perfect matches

****************** ******************
ACUCUUGCUGGGUUAGGAAUUCUUCCGUAGUAUAGUG
(((..(((((.(..((.....))..).))))).))).
--------------------UCUUCCGUAGUAUAGUG l=17 a=126 c
-CUCUUGCUGGGUUAGGAA------------------ l=18 a=0 c*
---------------------CUUCCGUAGUAUAGUG l=16 a=739 ma
-CUCUUGCUGGGUUAGGA------------------- l=17 a=0 ma*

------------------------CCGUAGUAUAG-- l=11 a=1 
------------------------CCGUAGUAUAGUG l=13 a=24 
-----------------------UCCGUAGUAUAG-- l=12 a=2 
-----------------------UCCGUAGUAUAGUG l=14 a=30 
----------------------UUCCGUAGUAUAGUG l=15 a=9 
---------------------CUUCCGUAGUAUA--- l=13 a=7 
---------------------CUUCCGUAGUAUAG-- l=14 a=52 
---------------------CUUCCGUAGUAUAGU- l=15 a=8 
---------------------CUUCCGUAGUAUAGUG l=16 a=739 (ma)
---------------------CUUCCGUAGUgUAGUG l=16 a=1 
---------------------CUUCCGUAGUAUuGUG l=16 a=1 
---------------------CUUCCaUAGUAUAGUG l=16 a=1 
---------------------CUUCCGUAGUAaAGUG l=16 a=1 
---------------------CUUCaGUAGUAUAGUG l=16 a=1 
--------------------UCUUCCGUAGU------ l=11 a=6 
--------------------UCUUCCGUAGUAU---- l=13 a=6 
--------------------UCUUCCGUAGUAUA--- l=14 a=12 
--------------------UCUaCCGUAGUAUA--- l=14 a=1 
--------------------UCUUCCGUAGUAUAG-- l=15 a=50 
--------------------UCUUCCGUAGUAUAGU- l=16 a=2 
--------------------UCUUCCGUAGUAUAGUG l=17 a=126 (c)
--------------------UCUUCaGUAGUAUAGUG l=17 a=1 
-----UGCUGGGUUAGGA------------------- l=13 a=1 
-----UGCUGGGUUAGGAAUa---------------- l=16 a=1 
----UUGCUGGGUUAGG-------------------- l=13 a=1 
---CUUGCUGGGUUAGGA------------------- l=15 a=1 
---CUUGCUGGGUUAGGAAU----------------- l=17 a=2 
--UCUUGCUGGGUUAGG-------------------- l=15 a=1 
--UCUUGCUGGGUUAGGAAU----------------- l=18 a=1 
ACUCUUGCUGGG------------------------- l=12 a=3 
ACUCUUGCUGGGUUAGG-------------------- l=17 a=5 
ACUCUUGCUGGGUUAGGA------------------- l=18 a=1 
ACUCUUGCUGGGUUAGGAAUa---------------- l=21 a=2 

mb-01110
ax-1001101
ku-11
ss-101011101110
fn-111
